Index

A

active_job_count (Queue attribute)

add() (fyrd.local.JobQueue method)

C

can_submit (Queue attribute) check_arguments() (in module fyrd.options) check_pid() (in module fyrd.run) check_queue() (in module fyrd.queue) clean() (fyrd.job.Job method) (Job method) (fyrd.submission_scripts.Function method) (fyrd.submission_scripts.Script method) (in module fyrd.basic)

clean_dir() (in module fyrd.basic) cmd() (in module fyrd.run) create_config() (in module fyrd.conf) create_config_interactive() (in module fyrd.conf)

D

delete() (in module fyrd.conf)

disappeared (Queue attribute) done (Job attribute)

E

end (Job attribute)

exitcode (Job attribute) (Queue attribute)

F

fetch_outputs() (fyrd.job.Job method) file_type() (in module fyrd.run)

files (Job attribute) Function (class in fyrd.submission_scripts) fyrd.logme (module)

G

get() (fyrd.job.Job method) (Job method) (fyrd.local.JobQueue method) get_cluster_environment() (in module fyrd.queue) get_exitcode() (fyrd.job.Job method) get_input() (in module fyrd.run)

get_jobs() (fyrd.queue.Queue method) get_option() (in module fyrd.conf) get_output() (fyrd.job.Job method) get_profile() (in module fyrd.conf) get_stderr() (fyrd.job.Job method) get_stdout() (fyrd.job.Job method) get_times() (fyrd.job.Job method)

I

id (Queue attribute) indent() (in module fyrd.run)

is_exe() (in module fyrd.run) is_file_type() (in module fyrd.run)

J

Job (class in fyrd) job_runner() (in module fyrd.local)

job_states (Queue attribute) JobQueue (class in fyrd.local) jobs (Queue attribute)

L

load_config() (in module fyrd.conf)

log() (in module fyrd.logme), [1]

M

make_job() (in module fyrd.basic)

make_job_file() (in module fyrd.basic) max_jobs (Queue attribute)

N

name (Queue attribute)

nodes (Queue attribute)

O

open_zipped() (in module fyrd.run) option_help() (in module fyrd.options) option_to_string() (in module fyrd.options)

options_to_string() (in module fyrd.options) out (Job attribute) owner (Queue attribute)

P

parapply() (in module fyrd.helpers)

parapply_summary() (in module fyrd.helpers) Profile (class in fyrd.conf)

Q

Queue (class in fyrd.queue) queue (Queue attribute)

queue_parser() (in module fyrd.queue) QueueError QueueJob() (fyrd.queue.Queue method)

R

restart() (fyrd.local.JobQueue method)

runtime (Job attribute)

S

Script (class in fyrd.submission_scripts) set_option() (in module fyrd.conf) set_profile() (in module fyrd.conf) slurm_queue_parser() (in module fyrd.queue) split_file() (in module fyrd.helpers) split_keywords() (in module fyrd.options) start (Job attribute)

state (Queue attribute) stderr (Job attribute) stdout (Job attribute) submit() (fyrd.job.Job method) (Job method) (in module fyrd.basic) submit_file() (in module fyrd.basic)

T

torque_queue_parser() (in module fyrd.queue)

U

update() (fyrd.job.Job method) (fyrd.local.JobQueue method) (fyrd.queue.Queue method)

update_queue_info() (fyrd.job.Job method)

W

wait() (fyrd.job.Job method) (Job method) (fyrd.local.JobQueue method) (fyrd.queue.Queue method) wait_to_submit() (fyrd.queue.Queue method) which() (in module fyrd.run)

write() (fyrd.conf.Profile method) (fyrd.job.Job method) (fyrd.submission_scripts.Function method) (fyrd.submission_scripts.Script method) write_config() (in module fyrd.conf) write_iterable() (in module fyrd.run)